Update computeFeatures.py

computeFeatures.py

@@ -35,7 +35,15 @@ import scipy.ndimage
 import scipy as sp
 from skimage.morphology import remove_small_objects
 
-from utils import getBoundingBox
+
+# Takes a binary mask image and outputs its bounding box
+def getBoundingBox(img):
+    rows = np.any(img, axis=1)
+    cols = np.any(img, axis=0)
+    rmin, rmax = np.where(rows)[0][[0, -1]]
+    cmin, cmax = np.where(cols)[0][[0, -1]]
+
+    return rmin, rmax, cmin, cmax
 
 
 # Computes sizes, diameters, and distance_to_closest_glom features for each glom