From 443dcd21f01bae0761bda28b08b4424a56a730d7 Mon Sep 17 00:00:00 2001
From: Nassim Bouteldja <nbouteldja@ukaachen.de>
Date: Wed, 6 Jul 2022 13:34:22 +0200
Subject: [PATCH] Update computeFeatures.py
---
computeFeatures.py | 12 ++++++++++--
1 file changed, 10 insertions(+), 2 deletions(-)
diff --git a/computeFeatures.py b/computeFeatures.py
index f9164e8..040e409 100644
--- a/computeFeatures.py
+++ b/computeFeatures.py
@@ -35,7 +35,15 @@ import scipy.ndimage
import scipy as sp
from skimage.morphology import remove_small_objects
-from utils import getBoundingBox
+
+# Takes a binary mask image and outputs its bounding box
+def getBoundingBox(img):
+ rows = np.any(img, axis=1)
+ cols = np.any(img, axis=0)
+ rmin, rmax = np.where(rows)[0][[0, -1]]
+ cmin, cmax = np.where(cols)[0][[0, -1]]
+
+ return rmin, rmax, cmin, cmax
# Computes sizes, diameters, and distance_to_closest_glom features for each glom
@@ -385,4 +393,4 @@ log.info('%%%% Ended regularly ! %%%%')
# print('Glom: {}'.format(glomN))
# print('Tuft: {}'.format(tuftN))
# print('Artery: {}'.format(arteryN))
-# print('Lumen: {}'.format(lumenN))
\ No newline at end of file
+# print('Lumen: {}'.format(lumenN))
--
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