Fix plugin detection

setup.sh

@@ -201,12 +201,12 @@ function manage_plugins() {
             # Check if plugin is already present
             repo_name_with_extension=${plugin_repositories[$i]##*/}
             repo_name=${repo_name_with_extension%*.git}
-            path=$(git config -f .gitmodules --get "submodule.Plugins/${repo_name}.path")
+            path=$(git config -f ../.gitmodules --get "submodule.Plugins/${repo_name}.path")
             if [ $? -ne 0 ]
             then
-                plugin_present=true
-            else
                 plugin_present=false
+            else
+                plugin_present=true
             fi
 
             if [ -n "${plugin_branches[$i]}" ]
@@ -240,6 +240,8 @@ function manage_plugins() {
             fi
         done
         cd ..
+        echo "Done, Press enter to continue."
+        read x
     fi
 }