From 78c985fce412344d8de3cd1a3e02d35a4aefede0 Mon Sep 17 00:00:00 2001 From: Krishna Chilleri <krishnachilleri@gmail.com> Date: Wed, 19 Feb 2025 10:18:01 -0700 Subject: [PATCH] hpc-beeflow: New package (#49036) * hpc-beeflow: New package * Update var/spack/repos/builtin/packages/hpc-beeflow/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * Update var/spack/repos/builtin/packages/hpc-beeflow/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * add new version of py-fastapi * Update var/spack/repos/builtin/packages/hpc-beeflow/package.py Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --- .../builtin/packages/hpc-beeflow/package.py | 48 +++++++++++++++++++ .../builtin/packages/py-fastapi/package.py | 1 + 2 files changed, 49 insertions(+) create mode 100644 var/spack/repos/builtin/packages/hpc-beeflow/package.py diff --git a/var/spack/repos/builtin/packages/hpc-beeflow/package.py b/var/spack/repos/builtin/packages/hpc-beeflow/package.py new file mode 100644 index 00000000000..ca5de3e5a7f --- /dev/null +++ b/var/spack/repos/builtin/packages/hpc-beeflow/package.py @@ -0,0 +1,48 @@ +# Copyright Spack Project Developers. See COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class HpcBeeflow(PythonPackage): + """BEE is a workflow orchestration system designed to build containerized + HPC applications and orchestrate workflows across HPC and cloud systems. + BEE has adopted the Common Workflow Language (CWL) for specifying workflows. + Complex scientific workflows specified by CWL are managed and visualized + through a graph database, giving the user the ability to monitor the state + of each task in the workflow. BEE runs jobs using the workload scheduler + (i.e. Slurm or Flux) on the HPC system that tasks are + specified to run on.""" + + homepage = "https://github.com/lanl/bee" + pypi = "hpc_beeflow/hpc_beeflow-0.1.9.tar.gz" + + # maintainers("pagrubel") + + license("MIT") + + version("0.1.9", sha256="196eb9155a5ca6e35d0cc514e0609cf352fc757088707306653496b83a311ac1") + + depends_on("python@3.8.3:3.12.2", type=("build", "run")) + depends_on("py-poetry@0.12:", type="build") + + depends_on("py-flask@2.0:", type=("build", "run")) + depends_on("py-fastapi@0.109.2", type=("build", "run")) + depends_on("py-uvicorn@0.27.1", type=("build", "run")) + depends_on("py-neo4j@5:", type=("build", "run")) + depends_on("py-pyyaml@6.0.1:", type=("build", "run")) + depends_on("py-flask-restful@0.3.9", type=("build", "run")) + depends_on("py-cwl-utils@0.16:", type=("build", "run")) + depends_on("py-apscheduler@3.6.3:", type=("build", "run")) + depends_on("py-jsonpickle@2.2.0:", type=("build", "run")) + depends_on("py-requests@:2.28", type=("build", "run")) + depends_on("py-requests-unixsocket@0.3.0:", type=("build", "run")) + depends_on("py-python-daemon@2.3.1:", type=("build", "run")) + depends_on("py-gunicorn@20.1.0:22", type=("build", "run")) + depends_on("py-typer@0.5.0:", type=("build", "run")) + depends_on("py-cffi@1.15.1:", type=("build", "run")) + depends_on("py-celery+redis+sqlalchemy@5.3.4:", type=("build", "run")) + depends_on("py-docutils@0.18.1", type=("build", "run")) + depends_on("py-graphviz@0.20.3:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/py-fastapi/package.py b/var/spack/repos/builtin/packages/py-fastapi/package.py index d30f4010731..a55cd1c79a0 100644 --- a/var/spack/repos/builtin/packages/py-fastapi/package.py +++ b/var/spack/repos/builtin/packages/py-fastapi/package.py @@ -16,6 +16,7 @@ class PyFastapi(PythonPackage): version("0.115.4", sha256="db653475586b091cb8b2fec2ac54a680ac6a158e07406e1abae31679e8826349") version("0.110.2", sha256="b53d673652da3b65e8cd787ad214ec0fe303cad00d2b529b86ce7db13f17518d") + version("0.109.2", sha256="f3817eac96fe4f65a2ebb4baa000f394e55f5fccdaf7f75250804bc58f354f73") with default_args(deprecated=True): # https://nvd.nist.gov/vuln/detail/CVE-2024-24762 version( -- GitLab